Embedded Files
The tool returns SNPs and indels that fulfill user-selected filter criteria, for sets of accessions that you select. Information (phenotypic and passport data) about the re-sequenced varieties are also available here.
SNP-Seek Publications
SNP-Seek database of SNPs derived from 3000 rice genomes
Rice SNP-seek database update: new SNPs, indels, and queries
SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa
Crop Galaxy (aka IRRI Galaxy)
Bioinformatics workbench, with rice-specific data (i.e new rice reference. genomes) and tools installed.
Rice Galaxy Publication: Rice Galaxy: an open resource for plant science
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