IRIC Data and Analysis Portal

Rice SNP-Seek Database 

The tool returns SNPs and indels that fulfill user-selected filter criteria, for sets of accessions that you select. Information (phenotypic and passport data) about the re-sequenced varieties are also available here.

SNP-Seek Publications

SNP-Seek database of SNPs derived from 3000 rice genomes 

Rice SNP-seek database update: new SNPs, indels, and queries 

SNP-Seek II: A resource for allele mining and analysis of big genomic data in Oryza sativa 

Crop Galaxy (aka IRRI Galaxy)

Bioinformatics workbench, with rice-specific data (i.e new rice reference. genomes) and tools installed. 

Rice Galaxy Publication: Rice Galaxy: an open resource for plant science