3K RG 1M GWAS SNP Dataset available for download in SNP-Seek

Post date: Oct 24, 2017 3:9:23 AM

    New LD pruned subset to try for GWAS is available as downloadable dataset in snp-seek. The data is based on the

Filtered SNP set (4.8M), a subset of Base SNP (18M). It was done with one round of LD pruning, r2 cutoff 0.8, window size

2kb and step 1 SNP, to remove only SNPs that are less than ~2kb apart. This leaves 1, 011, 601 snps.

    Visit our Bulk Download Page, scroll down and look for 3K RG 1M GWAS SNP Dataset, all chromosomes.