Resources‎ > ‎

IRIC Data and Analysis Portal

The links below provide access to databases and tools managed by IRIC. 

The tool returns SNPs (and soon, indels) that fulfill user-selected filter criteria, for sets of accessions that you select. Information (phenotypic and passport data) about the re-sequenced varieties are also available here.

How to cite SNP-Seek

Nickolai Alexandrov, Shuaishuai Tai, Wensheng Wang, Locedie Mansueto, Kevin Palis, Roven Rommel Fuentes, Victor Jun Ulat, Dmytro Chebotarov, Gengyun Zhang, Zhikang Li, Ramil Mauleon, Ruaraidh Sackville Hamilton, and Kenneth L. McNally. SNP-Seek database of SNPs derived from 3000 rice genomes. Nucl. Acids Res. (28 January 2015) 43 (D1): D1023-D1027.  doi:10.1093/nar/gku1039

Bioinformatics workbench, with rice-specific data (i.e new rice reference. genomes) and tools (mostly specialized for the IRRI Genotyping Service Laboratory) installed.